RelTime relaxes the strict molecular clock throughout the phylogeny
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RelTime Rates Collapse to a Strict Clock When Estimating the Timeline of Animal Diversification
Establishing an accurate timescale for the history of life is crucial to understand evolutionary processes. For this purpose, relaxed molecular clock models implemented in a Bayesian MCMC framework are generally used. However, these methods are time consuming. RelTime, a non-Bayesian method implementing a fast, ad hoc, algorithm for relative dating, was developed to overcome the computational i...
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Ongoing advances in sequencing technology have led to an explosive expansion in the molecular data available for building increasingly larger and more comprehensive timetrees. However, Bayesian relaxed-clock approaches frequently used to infer these timetrees impose a large computational burden and discourage critical assessment of the robustness of inferred times to model assumptions, influenc...
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The family Ephippidae consists of eight genera and 15 species. The genus Platax with five species distributed throughout Indo-Pacific, seemingly has more diversity than other genera of the family. Phylogenetic relationships among species and genera of the family, however, are not fully resolved. 48 sequences of eight species (four genera) of batfishes are available in the GenBank and have been ...
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Mitochondrial DNA remains one of the most widely used molecular markers to reconstruct the phylogeny and phylogeography of closely related birds. It has been proposed that bird mitochondrial genomes evolve at a constant rate of ~0.01 substitution per site per million years, that is that they evolve according to a strict molecular clock. This molecular clock is often used in studies of bird mito...
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BACKGROUND AND AIMS There is extensive variation in substitution rates among metazoan mitochondrial genomes, including differences among lineages and among sites. Differences in substitution rates among lineages are routinely taken into account in molecular phylogenetic and dating analyses. However, this is rarely the case for differences in the lineage-specific patterns of rate variation among...
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